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Sequence, Structure
& Function Databases
Nucleic Acid Databases |Protein Databases
|Carbohydrate
Databases |Model
Organisms Databases
|
DNA
& RNA Databases
Major Sequence Repositories -
Human Chromosome
Information -
Organelle Genome Databases - RNA Databases - Comparative & Phylogenetic Databases - SNPs,
Mutations and Variations Databases - Alternative Splicing
Databases - Specialized Databases
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| Major Sequence Repositories: |
DDBJ: DNA databank
of Japan
EMBL:
Maintained
by EMBL
GenBank:
Maintained by NCBI
| Human Chromosome Information: |
Click the link below to access chromosome information
| Organelle Genome
Databases: |
OGMP:
Organell genome megasequencing program
MitoMap: Human
mitochondrial genome database
Rfam: RNA familiy
database
tRNA:
tRNA sequences and genes
| Comparative & Phylogenetic Databases: |
COG:
Phylogenetic classification of proteins
HOVERGEN:
Database of homologous vertebrate genes
TreeBase:
A
database of phylogenetic knowledge
| SNPs, Mutations
& Variations Databases: |
ALPSbase: Database of
mutations causing human ALPS
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|
AGSD: Animal genome size database
AmiGO: The Gene
Ontology database
BACPAC: BAC and PAC
genomic DNA library info
CUTG: Codon usage
database
dbEST:
Database of expressed sequences or mRNA
dbGSS:
Genome survey sequence database
DBTSS: Database of
transcriptional start sites
DOGS: Database
of genome sizes
EPD: Eukaryotic promotor
database
FlyTrap: HTML based gene
expression
database
GEO: Gene expression
omnibus NCBI
GOLD:
Information on genome projects around the world
HTGS:
High-through-put genomic sequence at NCBI
IMGT: The
international ImMunoGeneTics information system
IPCN:
Index to Plant Chromosome Numbers database
TelDB:
The telomere database
NDB: Nucleic acid
database
NEDO: Human cDNA
sequence database
NPD: Nuclear
protein database
PLACE: Database of
plant cis-acting regulatory DNA elements
Refseq: The NCBI
reference
sequence project
SHIGAN: SHared Information of
GENetic resources, Japan
SpliceDB:
Canonical and non-canonical splice site sequences
TRRD:
Transcription Regulatory region database
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Protein
Databases
Protein Sequence
Databases - Protein Structure Databases - Protein Domains, Motifs and
Signatures - Others
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| Protein Sequence Databases: |
Antibodies: Sequence and Structure
BRENDA: Enzyme database
CD Antigens: Database of CD antigens
Histons:
Histone
sequence database
InterPro:
Intergrated documentation 5resources for protein families
iProClass: An
integrated protein classification database
MHCPEP:
Database of MHC binding peptides
MIPS:
Munich information centre for protein sequences
PIR:
Annotated, and non-redundant protein sequence database
PRF: Protein research foundation, Japan
ProtoMap:
Hierarchical classification of swissprot proteins
REBASE:
Restriction enzyme database
SwissProt:
Curated protein sequence database
Transfac:
Transcription factor database
Tumor gene database:
Genes with cancer-causing mutations
WD repeats: WD-repeat family of
proteins
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| Protein Structure Databases: |
Cath: Protein
structure classification
HIV Protease: HIV
protease database 3D structure
PDB: 3-D
macromolecular structure data
PSI: Protein structure
initiative
Scop: Structural
Classification of Proteins
| Protein Domains, Motifs & Signatures: |
CCD:
Conserved domain database and search service
DOMO: Homologous protein domain families
Pfam: Database of protein domains and HMMs
Prosite:
Database of protein families and domains
SMART:
Simple modular architecture research tool
TIGRFAM:
Protein families based on HMMs
Phospho Site: Database of
phosphorylation sites
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Other Databases
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Carb DB:
Carbohydrate Sequence and Structure Database
GlycoWord:
Glycoscience related information
SPECARB: Raman Spectra of carbohydrates
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AlzGene:
Alzheimer’s disease
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