| Microarray Data Standards |
| GEO |
Gene expression omnibus at NCBI |
| MAGE |
MicroArray and Gene Expression |
| MGED |
Microarray gene expression database group |
| MIAME |
Minimum information about a microarray
experiment |
|
|
| Gene Expression Databases: |
| ArrayExpress |
Microarray based gene expression data at EBI |
AREX
|
The
Arabidopsis expression database
|
| Body Map |
Human and mouse
expression database |
| Cardiovascular |
The Cardiac Genes Database |
EpoDB
|
Genes
related to vertebrate red blood cells
|
| ExpressDB |
Yeast RNA expression
data |
| Fly-Trap |
Fruit fly brain gene expressiond atabase |
| GEO |
Public gene expression data from various
platforms at NCBI |
| GXD |
Gene expression database of mouse |
HLA-I
|
HLA
class I information at Washington university
|
| Microarray Links |
Gene expression and microarray related links |
| MIRAGE |
Molecular informatics
resource for the analysis of gene expression |
Module Map
|
Conditional
activity of expression modules in cancer
|
Oncomine
|
Cancer
microarray database
|
| PEDB |
Prostate expression
database |
| RAD |
RNA abundance database |
| RegulonDB |
Database on
transcription regulation in E Coli |
SarcoGene
|
Skeletal muscle gene
expression database
|
Stem Cells
|
Stem
cell database
|
| Tooth Development |
Gene expression
during tooth development |
| Pancreas |
Endocrine pancreas
consortium |
|
|
| Microarray
Projects: |
| AECOM |
Chip based functional genomics studies |
Bibliography
|
Bibliography on microarry data
analysis
|
| ChipDB |
Database of gene expression at MIT |
| DNA Microarray |
An excellent site for DNA microarray
related information |
EBI
|
Microarray informatics at EBI
|
ENS,
France
|
Microarrays
|
EPAMAC
|
U.S. Environment Protection
Agency microarray consortium
|
| GridIt |
Resources for microarrays |
mAdb at NCI
|
Mad bee project at NCI
|
| MAP |
The microarray
project at NHGRI |
| PaGE |
Patterns of gene
expression at UPENN |
| SMD |
Stanford microarray database |
| Microarrays.org |
A public source for microarray protocols
and software at UCSF |
| NCI60 |
NCI60 cancer microarray project |
NIEHS
|
NIEHS cDNA microarray group
|
| MAXD |
Data warehouse and visualisation for
microarray data at Manchester |
| Microarray data |
Pat Brown lab at Stanford |
| NIEHS |
NIEHS microarray center |
OCI
|
Ontario cancer institute microarray center
|
Yale
|
The Keck DNA Microarray Resource at Yale
|
|
|
| Other
Differential Display Methods: |
| SAGE |
Serial analysis of gene expression at NIH |
| SAGE Net |
Extensive SAGE related information |
| SADE |
A SAGE adaptation for down sized extracts |
| RAGE |
Rapid analysis of gene expression at M.D.
Anderson cancer center |
|
|
| Tissue
Specific Expression Databases |
| CellProbDB |
Information about membrane channels,
receptor and neurotransmitters |
| EpoDB |
Erythropoiesis database at UPENN |
| MGAP |
Mammary Genome Anatomy Project |
| NeuronDB |
Database of voltage gated conductance's,
neurotransmitter substances and receptor |
|
|
| Data
Analysis & Visualization Tools |
Companies
& Businesses page for commercial packages for data analysis and
visulization tools
Go to Analysis page to find many good utilities
|
| BRB Array Tools |
Free analysis software from NCI |
| Eisen Lab at LBNL |
Sveral analysis tools available |
| TIGR |
Several tools from TIGR |
| XCluster |
Clustering tool from Stanford |
UnCHIP
|
Program to convert Affymetrix probe set
|
ProbeExplorer
|
Association analysis between microarray oligonucleotide probes and transcripts in genomic context
|
|
|
| Microarray
Related Links |
BioChipNet
|
The informational web site on biochip
technologies |
Horizon
Press
|
Microarray information
|
Microarray
Links
|
Susanna Sansones page
|
